STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK83047.1InterPro IPR001647; KEGG: cbl:CLK_0533 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family. (198 aa)    
Predicted Functional Partners:
ADK83046.1
MATE efflux family protein; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: ctc:CTC00419 Na+ driven multidrug efflux pump; PFAM: multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
     
 0.785
corA
Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
     
 0.627
ADK83049.1
Response regulator receiver protein; InterPro IPR001789; KEGG: gsu:GSU1928 sensor histidine kinase/response regulator; SPTR: Sensor protein.
       0.570
ADK83050.1
Transcriptional regulator, XRE family; InterPro IPR001387; KEGG: bbt:BBta_3342 putative transcriptional regulatory protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative transcriptional regulatory protein; PFAM: Helix-turn-helix.
     
 0.414
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.