STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK83170.1Leucine-rich repeat protein; InterPro IPR001611; KEGG: lmy:LM5923_0305 internalin G; PFAM: leucine-rich repeat protein; SPTR: S4 domain protein; PFAM: Leucine Rich Repeat. (295 aa)    
Predicted Functional Partners:
ADK83171.1
COGs: COG1186 Protein chain release factor B; InterPro IPR000352; KEGG: dba:Dbac_2864 class I peptide chain release factor; PFAM: Class I peptide chain release factor; SPTR: Class I peptide chain release factor; PFAM: RF-1 domain.
     
 0.564
ADK83169.1
Short-chain dehydrogenase/reductase SDR; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198:IPR002347; KEGG: pjd:Pjdr2_1690 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.536
ADK82226.1
COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR000728:IPR010918:IPR010141; KEGG: cth:Cthe_0554 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase, clade II.
     
 0.442
ADK80544.1
COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR013196:IPR004143:IPR003142:IPR004408; KEGG: hmu:Hmuk_2576 biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; biotin protein ligase domain protein; SPTR: Biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: BirA biotin operon repressor domain; birA, biotin-[acetyl-CoA-carboxylase] ligase region.
     
 0.415
ADK80817.1
COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR004358:IPR017442:IPR003018:IPR003661:IPR 003594:IPR008266:IPR020635:IPR002290:IPR000719:IPR005467; KEGG: npu:Npun_R2272 multi-sensor signal transduction multi-kinase; PFAM: ATP-binding region ATPase domain protein; Serine/threonine-protein kinase-like domain; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; GAF domain protein; histidine kina [...]
  
  
 0.406
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.