STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH48010.1Arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family. (511 aa)    
Predicted Functional Partners:
SHH47891.1
Hypothetical protein.
 
     0.920
SHH47968.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
    0.915
SHH47860.1
alpha-N-arabinofuranosidase.
 
 
  0.913
SHH48051.1
alpha-N-arabinofuranosidase.
 
 
  0.895
SHH48133.1
Starch-binding associating with outer membrane.
 
     0.895
SHH48165.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.883
SHH47928.1
Arabinan endo-1,5-alpha-L-arabinosidase.
 
    
0.842
SHH48097.1
Repeat domain-containing protein.
 
     0.804
SHH59466.1
Rhamnogalacturonan endolyase.
  
 
  0.702
SHH89122.1
Beta-xylosidase.
  
     0.635
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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