STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH48357.1Beta-carotene 3-hydroxylase. (149 aa)    
Predicted Functional Partners:
SHH48316.1
Phytoene/squalene synthetase.
 
 0.987
SHH48279.1
Phytoene desaturase.
 
   
 0.959
SHH76450.1
Lycopene beta-cyclase.
 
  
 0.921
SHH48243.1
DNA-binding transcriptional regulator, MerR family.
 
     0.873
SHH48396.1
Hypothetical protein.
       0.780
SHI23476.1
linoleoyl-CoA desaturase.
 
 
 0.677
SHH56818.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.656
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
 0.656
SHI14429.1
Hypothetical protein; Belongs to the cytochrome P450 family.
   
 0.632
SHH56438.1
O-methyltransferase.
   
 0.607
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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