STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH55964.1Starch-binding associating with outer membrane. (614 aa)    
Predicted Functional Partners:
SHH56004.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.962
SHH55922.1
Protein of unknown function.
 
     0.913
SHH49660.1
Starch-binding associating with outer membrane.
  
 
   0.809
SHH57726.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.806
SHI26895.1
Protein of unknown function.
  
     0.774
SHH57800.1
Protein of unknown function.
  
     0.773
SHH57535.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.769
SHH49698.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.754
SHI26909.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.733
SHH59013.1
Signal transduction histidine kinase.
 
   
 0.725
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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