STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH59830.1Starch-binding associating with outer membrane. (700 aa)    
Predicted Functional Partners:
SHH59789.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.950
SHH59695.1
Glycosyl hydrolases family 2, sugar binding domain.
 
 
   0.797
SHH50146.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
  
 
   0.790
SHH59502.1
Protein of unknown function, DUF608.
  
     0.749
SHH59121.1
Lysophospholipase L1.
  
 
   0.709
SHI20175.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.708
SHI20143.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.704
SHH59050.1
Lysophospholipase L1.
  
 
   0.678
SHI20152.1
Starch-binding associating with outer membrane.
  
     0.664
SHI20184.1
Starch-binding associating with outer membrane.
  
     0.656
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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