STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI03119.1Hypothetical protein. (220 aa)    
Predicted Functional Partners:
SHI03139.1
Hypothetical protein.
 
     0.925
SHI03098.1
Hypothetical protein.
       0.769
SHH76581.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.746
SHH89792.1
Hypothetical protein.
  
     0.744
SHH79221.1
Hypothetical protein.
  
     0.730
SHH40668.1
CAAX protease self-immunity.
  
     0.719
SHI18619.1
Calx-beta domain-containing protein; Partial gene; manually curated.
  
     0.716
SHH40901.1
CYTH domain-containing protein.
  
     0.701
SHI06327.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.691
SHI03079.1
Two component transcriptional regulator, LuxR family.
 
     0.664
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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