STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI09665.1TonB-linked outer membrane protein, SusC/RagA family. (1008 aa)    
Predicted Functional Partners:
SHI09639.1
Protein of unknown function.
 
     0.936
SHI09651.1
Starch-binding associating with outer membrane.
 
     0.930
SHI09627.1
Glycosyl hydrolase family 10.
 
     0.911
SHI09677.1
Starch-binding associating with outer membrane.
 
     0.910
SHI09579.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.733
SHI09689.1
TonB-linked outer membrane protein, SusC/RagA family.
 
    
0.728
SHI09518.1
Signal transduction histidine kinase.
  
     0.714
SHI09285.1
Enterochelin esterase.
  
    0.676
SHI09348.1
Glycosyl-hydrolase 97 C-terminal, oligomerisation.
  
     0.647
SHI09294.1
Enterochelin esterase.
  
    0.629
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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