STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI14094.1Biopolymer transport protein ExbB. (264 aa)    
Predicted Functional Partners:
SHI14070.1
Biopolymer transport protein ExbD.
 
 0.990
SHI14058.1
Biopolymer transport protein ExbD.
 
 0.989
SHH99786.1
Biopolymer transport protein ExbD.
 
 0.965
SHI15342.1
Outer membrane transport energization protein ExbD.
 
 0.928
SHI14541.1
Protein TonB.
 
 0.830
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 0.783
SHH90960.1
TonB protein C-terminal.
  
 0.779
SHI15352.1
Outer membrane transport energization protein TonB.
  
 0.779
SHH86086.1
Hypothetical protein.
  
 0.756
SHI14084.1
Hypothetical protein.
       0.723
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.