STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI16117.1Outer membrane receptor proteins, mostly Fe transport. (789 aa)    
Predicted Functional Partners:
SHI16126.1
Protein of unknown function.
 
    0.920
SHI24949.1
Protein of unknown function.
 
    0.754
SHI16230.1
Protein of unknown function.
 
    0.753
SHI16139.1
Ankyrin repeat.
 
     0.611
SHI16151.1
Predicted protein.
 
     0.562
SHI16102.1
AraC-type DNA-binding protein.
       0.533
SHH90960.1
TonB protein C-terminal.
    
  0.504
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
    
  0.504
SHI14541.1
Protein TonB.
    
  0.504
SHI15352.1
Outer membrane transport energization protein TonB.
    
  0.504
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.