STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI16807.1cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (187 aa)    
Predicted Functional Partners:
SHH37554.1
Glutamate synthase (NADH) large subunit.
    
 0.868
SHI23387.1
PAS domain S-box-containing protein.
   
 0.745
SHI16798.1
Chloramphenicol O-acetyltransferase type A.
 
     0.656
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.560
SHI01335.1
CHAT domain-containing protein.
  
 
 
 0.558
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.557
SHI08273.1
PAS/PAC sensor hybrid histidine kinase.
   
 0.553
SHI25788.1
Signal transduction histidine kinase.
    
 
 0.544
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.542
SHI04975.1
RNA polymerase Rpb6.
    
   0.536
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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