STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI20061.1Tagaturonate reductase. (479 aa)    
Predicted Functional Partners:
SHI20056.1
Altronate hydrolase.
 
 0.995
uxaC
D-glucuronate isomerase.
 
 
 0.993
SHI20093.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.911
SHI26114.1
Fructokinase.
    
 0.900
SHI26100.1
Fructan beta-fructosidase; Belongs to the glycosyl hydrolase 32 family.
     
 0.896
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.877
SHI20086.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.866
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.819
uxuA-2
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.819
SHI20069.1
TRAP transporter, DctM subunit.
 
   
 0.781
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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