STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI25106.1Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. (434 aa)    
Predicted Functional Partners:
SHI25117.1
Ligand-binding SRPBCC domain-containing protein.
 
     0.712
SHI25111.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.622
SHH81505.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.584
SHH48279.1
Phytoene desaturase.
 
  
 0.567
SHI05291.1
Protein tyrosine phosphatase; Manually curated; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
   0.567
SHH48316.1
Phytoene/squalene synthetase.
 
   
 0.559
ybeY
rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.556
SHI24731.1
Predicted naringenin-chalcone synthase.
    
   0.556
SHI25101.1
Hypothetical protein.
       0.539
SHI17319.1
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.512
Your Current Organism:
Leeuwenhoekiella palythoae
NCBI taxonomy Id: 573501
Other names: DSM 19859, KCTC 22020, KMM 6264, L. palythoae, LMG 24856, LMG:24856, Leeuwenhoekiella palythoae Nedashkovskaya et al. 2009, Leeuwenhoekiella sp. KMM 6264
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