STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SI65_04442PHD finger-like-containing protein 5B. (108 aa)    
Predicted Functional Partners:
SI65_00947
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.999
SI65_08721
Pre-mRNA branch site p14-like protein.
   
 0.998
SI65_06644
U2 small nuclear ribonucleoprotein A.
   
 0.998
SI65_04881
PSP domain-containing protein.
    
 0.998
SI65_03521
Uncharacterized protein.
    
 0.998
SI65_03960
CID domain-containing protein.
   
 0.998
SI65_04021
U2 snRNP component prp10.
   
 0.998
SI65_02669
Pre-mRNA-processing ATP-dependent RNA helicase prp5.
    
 0.998
SI65_00136
Pre-mRNA-splicing factor rse1.
   
 0.998
SI65_10033
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.996
Your Current Organism:
Aspergillus cristatus
NCBI taxonomy Id: 573508
Other names: A. cristatus, ATCC 16468, Aspergillus cristatellus, CBS 123.53, Eurotium cristatum, IMI 172278, IMI 172280, NRRL 4222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.