Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEI35076.1 | AEI35287.1 | F7308_0148 | F7308_0359 | DNA internalization-related competence protein ComEC/Rec2. | ATP-dependent DNA helicase RecG. | 0.550 |
AEI35076.1 | AEI36695.1 | F7308_0148 | F7308_1771 | DNA internalization-related competence protein ComEC/Rec2. | Single-stranded-DNA-specific exonuclease RecJ. | 0.657 |
AEI35286.1 | AEI35287.1 | F7308_0358 | F7308_0359 | Hypothetical protein. | ATP-dependent DNA helicase RecG. | 0.544 |
AEI35286.1 | AEI35288.1 | F7308_0358 | F7308_0360 | Hypothetical protein. | Hypothetical protein. | 0.532 |
AEI35287.1 | AEI35076.1 | F7308_0359 | F7308_0148 | ATP-dependent DNA helicase RecG. | DNA internalization-related competence protein ComEC/Rec2. | 0.550 |
AEI35287.1 | AEI35286.1 | F7308_0359 | F7308_0358 | ATP-dependent DNA helicase RecG. | Hypothetical protein. | 0.544 |
AEI35287.1 | AEI35288.1 | F7308_0359 | F7308_0360 | ATP-dependent DNA helicase RecG. | Hypothetical protein. | 0.779 |
AEI35287.1 | AEI35289.1 | F7308_0359 | F7308_0361 | ATP-dependent DNA helicase RecG. | Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.501 |
AEI35287.1 | AEI36695.1 | F7308_0359 | F7308_1771 | ATP-dependent DNA helicase RecG. | Single-stranded-DNA-specific exonuclease RecJ. | 0.486 |
AEI35287.1 | dnaA | F7308_0359 | F7308_0001 | ATP-dependent DNA helicase RecG. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.559 |
AEI35287.1 | guaB | F7308_0359 | F7308_1657 | ATP-dependent DNA helicase RecG. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.591 |
AEI35287.1 | mfd | F7308_0359 | F7308_1571 | ATP-dependent DNA helicase RecG. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.490 |
AEI35287.1 | polA | F7308_0359 | F7308_0616 | ATP-dependent DNA helicase RecG. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.683 |
AEI35287.1 | topA | F7308_0359 | F7308_0445 | ATP-dependent DNA helicase RecG. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.643 |
AEI35288.1 | AEI35286.1 | F7308_0360 | F7308_0358 | Hypothetical protein. | Hypothetical protein. | 0.532 |
AEI35288.1 | AEI35287.1 | F7308_0360 | F7308_0359 | Hypothetical protein. | ATP-dependent DNA helicase RecG. | 0.779 |
AEI35288.1 | AEI35289.1 | F7308_0360 | F7308_0361 | Hypothetical protein. | Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.501 |
AEI35289.1 | AEI35287.1 | F7308_0361 | F7308_0359 | Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | ATP-dependent DNA helicase RecG. | 0.501 |
AEI35289.1 | AEI35288.1 | F7308_0361 | F7308_0360 | Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | Hypothetical protein. | 0.501 |
AEI35289.1 | mfd | F7308_0361 | F7308_1571 | Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.480 |
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