STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI35582.1Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (281 aa)    
Predicted Functional Partners:
AEI35583.1
Acid phosphatase, class B.
       0.774
AEI36267.1
Succinylglutamate desuccinylase/aspartoacylase.
  
     0.606
AEI35581.1
Hypothetical protein.
       0.501
AEI35671.1
Polyketide synthase modules-related protein.
  
 
 0.470
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.411
AEI35861.1
SM-20-related protein.
  
     0.403
Your Current Organism:
Francisella salina
NCBI taxonomy Id: 573569
Other names: F. salina, Francisella sp. TX077308, strain TX07-7308
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