Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEI35562.1 | polA | F7308_0635 | F7308_0616 | RecD-like DNA helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.528 |
AEI35562.1 | recB | F7308_0635 | F7308_0968 | RecD-like DNA helicase. | Exodeoxyribonuclease V beta chain RecB; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and [...] | 0.902 |
AEI35562.1 | recC | F7308_0635 | F7308_0960 | RecD-like DNA helicase. | Exodeoxyribonuclease V gamma chain RecC; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and [...] | 0.862 |
AEI35886.1 | polA | F7308_0959 | F7308_0616 | Ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.499 |
AEI35886.1 | recC | F7308_0959 | F7308_0960 | Ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family. | Exodeoxyribonuclease V gamma chain RecC; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and [...] | 0.556 |
AEI35888.1 | AEI35889.1 | F7308_0961 | F7308_0962 | Hypothetical protein. | Hypothetical protein. | 0.778 |
AEI35888.1 | AEI35890.1 | F7308_0961 | F7308_0963 | Hypothetical protein. | Diaminopimelate decarboxylase. | 0.780 |
AEI35888.1 | AEI35891.1 | F7308_0961 | F7308_0964 | Hypothetical protein. | Peptidase, M23/M37 family. | 0.808 |
AEI35888.1 | recC | F7308_0961 | F7308_0960 | Hypothetical protein. | Exodeoxyribonuclease V gamma chain RecC; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and [...] | 0.501 |
AEI35889.1 | AEI35888.1 | F7308_0962 | F7308_0961 | Hypothetical protein. | Hypothetical protein. | 0.778 |
AEI35889.1 | AEI35890.1 | F7308_0962 | F7308_0963 | Hypothetical protein. | Diaminopimelate decarboxylase. | 0.946 |
AEI35889.1 | AEI35891.1 | F7308_0962 | F7308_0964 | Hypothetical protein. | Peptidase, M23/M37 family. | 0.940 |
AEI35889.1 | recC | F7308_0962 | F7308_0960 | Hypothetical protein. | Exodeoxyribonuclease V gamma chain RecC; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and [...] | 0.501 |
AEI35890.1 | AEI35888.1 | F7308_0963 | F7308_0961 | Diaminopimelate decarboxylase. | Hypothetical protein. | 0.780 |
AEI35890.1 | AEI35889.1 | F7308_0963 | F7308_0962 | Diaminopimelate decarboxylase. | Hypothetical protein. | 0.946 |
AEI35890.1 | AEI35891.1 | F7308_0963 | F7308_0964 | Diaminopimelate decarboxylase. | Peptidase, M23/M37 family. | 0.945 |
AEI35890.1 | recC | F7308_0963 | F7308_0960 | Diaminopimelate decarboxylase. | Exodeoxyribonuclease V gamma chain RecC; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and [...] | 0.501 |
AEI35891.1 | AEI35888.1 | F7308_0964 | F7308_0961 | Peptidase, M23/M37 family. | Hypothetical protein. | 0.808 |
AEI35891.1 | AEI35889.1 | F7308_0964 | F7308_0962 | Peptidase, M23/M37 family. | Hypothetical protein. | 0.940 |
AEI35891.1 | AEI35890.1 | F7308_0964 | F7308_0963 | Peptidase, M23/M37 family. | Diaminopimelate decarboxylase. | 0.945 |
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