truA protein (Francisella uliginis) - STRING interaction network

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Score

truA

tRNA pseudouridine(38-40) synthase TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (258 aa)

Predicted Functional Partners:

rplQ

0.770

truB

0.706

rpoA

0.644

rpoA-2

0.644

trpF

0.614

API87387.1

0.588

rsmH

0.570

ybeY

0.561

rpoC

0.544

API87029.1

0.542

Your Current Organism:

Francisella uliginis

NCBI taxonomy Id: 573570
Other names: F. uliginis, Francisella sp. TX077310, strain TX07-7310

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
API87029.1	API87387.1	F7310_06510	F7310_08430	Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
API87029.1	truA	F7310_06510	F7310_04705	Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA pseudouridine(38-40) synthase TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.542
API87387.1	API87029.1	F7310_08430	F7310_06510	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
API87387.1	rplQ	F7310_08430	F7310_01385	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
API87387.1	rpoA	F7310_08430	F7310_01380	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.472
API87387.1	rpoA-2	F7310_08430	F7310_02880	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.472
API87387.1	rpoC	F7310_08430	F7310_08980	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.479
API87387.1	rsmH	F7310_08430	F7310_03210	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	16S rRNA (cytosine(1402)-N(4))-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.	0.402
API87387.1	truA	F7310_08430	F7310_04705	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA pseudouridine(38-40) synthase TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.588
rplQ	API87387.1	F7310_01385	F7310_08430	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
rplQ	rpoA	F7310_01385	F7310_01380	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.941
rplQ	rpoA-2	F7310_01385	F7310_02880	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.848
rplQ	rpoC	F7310_01385	F7310_08980	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.959
rplQ	truA	F7310_01385	F7310_04705	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA pseudouridine(38-40) synthase TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.770
rplQ	truB	F7310_01385	F7310_02630	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA pseudouridine(55) synthase TruB; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.598
rplQ	ybeY	F7310_01385	F7310_04595	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.844
rpoA	API87387.1	F7310_01380	F7310_08430	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
rpoA	rplQ	F7310_01380	F7310_01385	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
rpoA	rpoA-2	F7310_01380	F7310_02880	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	F7310_01380	F7310_08980	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.988