STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIC63788.1Putative RNA pseudouridine synthase; Ab initio prediction:Prodigal:2.60,AA similarity to PFAM:PF00849. (169 aa)    
Predicted Functional Partners:
sufB
FeS cluster assembly protein sufB; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P77522.
       0.773
sufC
Putative ATP-dependent transporter SufC; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P77499.
       0.773
AIC63786.1
Hypothetical protein; Ab initio prediction:Prodigal:2.60.
       0.773
sufS
Cysteine desulfurase; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P77444.
       0.773
AIC63783.1
Hypothetical protein; Ab initio prediction:Prodigal:2.60.
       0.572
valS
Valine--tRNA ligase; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q55522.
       0.551
Your Current Organism:
Hodgkinia cicadicola
NCBI taxonomy Id: 573658
Other names: C. Hodgkinia cicadicola, Candidatus Hodgkinia cicadicola
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