STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplJ50S ribosomal protein L10; Ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK00099. (170 aa)    
Predicted Functional Partners:
rplK
Putative 50S ribosomal subunit protein L11; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P62441; RRP-L11.
       0.773
rplL
Putative 50S ribosomal subunit L7/L12; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q6N4R8; RRP-L7/L12.
       0.773
rpoB
DNA-directed RNA polymerase subunit beta; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0A8V2.
       0.773
rpoC
DNA-directed RNA polymerase subunit beta; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0A8T7.
       0.773
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
       0.773
rpsG
30S ribosomal protein S7; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P22744.
       0.773
fusA
Elongation factor G; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0A556.
       0.773
tufA
Elongation factor Tu; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P64027.
       0.737
rpsJ
30S ribosomal protein S10; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q6N4T6.
       0.737
rplC
Putative 50S ribosomal subunit protein L3; Ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P60456.
       0.702
Your Current Organism:
Hodgkinia cicadicola
NCBI taxonomy Id: 573658
Other names: C. Hodgkinia cicadicola, Candidatus Hodgkinia cicadicola
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.