STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL11959.1Protein of unknown function DUF965; COGs: COG4472 conserved hypothetical protein; InterPro IPR009309; KEGG: llm:llmg_0150 hypothetical protein; PFAM: protein of unknown function DUF965; SPTR: A9QSH9 Putative uncharacterized protein ybeA; PFAM: Bacterial protein of unknown function (DUF965); Belongs to the UPF0297 family. (87 aa)    
Predicted Functional Partners:
ADL11961.1
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
 
    0.951
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.779
ADL13175.1
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.762
ADL12234.1
Protein of unknown function DUF633; COGs: COG2384 SAM-dependent methyltransferase; InterPro IPR006901; KEGG: tte:TTE1754 SAM-dependent methyltransferase; PFAM: protein of unknown function DUF633; SPTR: Q8R971 Predicted SAM-dependent methyltransferase; PFAM: Family of unknown function (DUF633).
  
     0.741
ADL13815.1
Protein of unknown function DUF951; COGs: COG4481 conserved hypothetical protein; InterPro IPR009296; KEGG: dae:Dtox_4356 protein of unknown function DUF951; PFAM: protein of unknown function DUF951; SPTR: C1TAP4 Uncharacterized conserved protein; PFAM: Bacterial protein of unknown function (DUF951).
  
     0.726
ADL12691.1
Stage V sporulation protein B; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR014249:IPR002797; KEGG: hor:Hore_22040 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: B8D0L3 Polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B.
  
     0.708
ADL13661.1
Resolvase RNase H domain protein fold protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
    0.706
ADL11645.1
COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797:IPR014249; KEGG: hor:Hore_21180 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: B8D011 Polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B.
  
     0.702
ADL11960.1
Conserved hypothetical protein; InterPro IPR017850; KEGG: hor:Hore_05770 hypothetical protein; SPTR: B8D2A7 Putative uncharacterized protein.
       0.692
ADL12488.1
COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR010979:IPR008616:IPR008532; KEGG: hor:Hore_09780 fibronectin-binding A domain protein; PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; SPTR: B8CWR5 Fibronectin-binding A domain protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA).
  
     0.662
Your Current Organism:
Acetohalobium arabaticum
NCBI taxonomy Id: 574087
Other names: A. arabaticum DSM 5501, Acetohalobium arabaticum DSM 5501, Acetohalobium arabaticum str. DSM 5501, Acetohalobium arabaticum strain DSM 5501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.