STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_01320Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)    
Predicted Functional Partners:
HA38_01330
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.948
HA38_01325
Fimbrial chaperone protein StbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.940
HA38_01340
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.938
HA38_15555
Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.869
HA38_12180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.838
HA38_12175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.833
HA38_13135
Deoxyribonuclease HsdR; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.833
HA38_12080
Pilin outer membrane usher protein SafC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.828
HA38_12075
Pili assembly chaperone protein SafB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.824
HA38_19325
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.823
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.