STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_01780Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family. (70 aa)    
Predicted Functional Partners:
HA38_08105
Molecular chaperone OsmY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
HA38_08100
DUF1328 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.942
HA38_21585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.918
HA38_11360
DUF903 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.887
HA38_12225
Osmotically-inducible protein OsmY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.777
HA38_05390
UDP-phosphate galactose phosphotransferase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.694
HA38_11240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.693
HA38_22725
Hydroxyisourate hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.693
HA38_22730
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.693
HA38_12315
Sugar isomerase; Cleaves 6-deoxy-6-sulfo-D-fructose 1-phosphate (SFP) to form dihydroxyacetone phosphate (DHAP) and 3-sulfolactaldehyde (SLA). Belongs to the aldolase LacD family.
   
    0.690
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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