STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_01865AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
HA38_01860
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.784
HA38_02575
Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.712
HA38_00580
Transcriptional activator RhaS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.701
HA38_02040
DNA-binding transcriptional regulator RamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
HA38_00585
AraC family transcriptional regulator; Activates the expression of rhaRS in response to L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.648
HA38_05540
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.637
HA38_07800
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
HA38_01895
AraC family transcriptional regulator; Regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.609
HA38_09990
NADP-dependent malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.564
HA38_01360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.544
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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