STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
HA38_01895AraC family transcriptional regulator; Regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)    
Predicted Functional Partners:
HA38_15170
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.761
HA38_02575
Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.712
HA38_01360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.625
HA38_01865
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.609
HA38_01900
Redox-sensitive transcriptional activator SoxR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.573
HA38_09990
NADP-dependent malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.564
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.530
HA38_22810
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.494
HA38_07735
Transcriptional regulator MelR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
HA38_14010
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.441
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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