STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_02415Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)    
Predicted Functional Partners:
HA38_02420
Flippase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.829
HA38_01360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.788
HA38_05410
Amylovoran biosynthesis protein AmsB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
HA38_10155
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.686
HA38_10190
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
HA38_18575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.625
HA38_05420
Amylovoran biosynthesis protein AmsD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.566
HA38_05435
Colanic acid biosynthesis glycosyltransferase WcaL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.426
HA38_18115
ADP-heptose--LPS heptosyltransferase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.422
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.