STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_03135Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)    
Predicted Functional Partners:
HA38_06275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
HA38_12110
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
HA38_23360
Type VI secretion protein VasK; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.676
HA38_09675
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
HA38_02310
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
HA38_12135
CAP-Gly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
HA38_07935
DUF4432 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.512
HA38_11740
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.511
HA38_03140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
lacY
MFS transporter; Lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.503
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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