STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_03855Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)    
Predicted Functional Partners:
HA38_12040
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
HA38_03850
Two-component system sensor histidine kinase DcuS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.471
HA38_12110
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
HA38_14135
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
HA38_11780
Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.453
HA38_23360
Type VI secretion protein VasK; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.445
HA38_06910
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.413
HA38_11710
Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.403
HA38_11740
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.402
HA38_11975
N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.401
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.