STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_06210GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)    
Predicted Functional Partners:
HA38_13025
Urea carboxylase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
HA38_22950
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.725
HA38_16675
Transcriptional regulator LldR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.688
HA38_05295
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
HA38_01665
GntR family transcriptional regulator; Regulates the expression of uxuBA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.616
HA38_20565
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.602
HA38_13155
NadR type nicotinamide-nucleotide adenylyltransferase; Catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.601
HA38_06205
Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
HA38_22075
Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.489
HA38_08355
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.477
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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