STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_09080Suppressor of fused protein (SUFU); Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)    
Predicted Functional Partners:
HA38_01245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
HA38_01880
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.759
HA38_05555
SrfC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
HA38_18710
Pilus assembly protein HofM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
HA38_20195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
HA38_06715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.725
HA38_05565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
HA38_17205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0319 family.
  
     0.716
HA38_07010
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
HA38_15985
CAAX protease family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.