STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_10050Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)    
Predicted Functional Partners:
HA38_02580
Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.998
HA38_05845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.990
HA38_10045
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
HA38_09335
Sensor histidine kinase BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.974
HA38_18210
Two-component system sensor histidine kinase CpxA; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.931
HA38_05355
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.919
HA38_02035
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.875
HA38_15375
Response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.867
HA38_07145
Two-component system response regulator BasR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.850
HA38_22710
Two-component sensor histidine kinase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.846
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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