STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_10790Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)    
Predicted Functional Partners:
HA38_10785
Protein of avirulence locus ImpE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.996
HA38_10725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
HA38_10770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.970
HA38_10735
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.968
HA38_10745
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.962
HA38_10750
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
HA38_00335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.945
HA38_10775
Serine/threonine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.928
HA38_10720
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.925
HA38_10715
Type VI secretion system-associated lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.918
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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