STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_11820Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
HA38_11830
Type IV secretion system protein TraC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.947
HA38_11785
type-F conjugative transfer system pilin assembly protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.807
HA38_11745
Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.806
HA38_11780
Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.806
HA38_11905
Transcriptional activator RfaH; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.806
HA38_11740
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.805
HA38_11775
type-F conjugative transfer system pilin assembly protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.805
HA38_11825
type-F conjugative transfer system protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
HA38_11810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
HA38_11815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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