STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_20320Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
HA38_20325
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.968
HA38_20315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.966
HA38_20330
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.963
HA38_04350
Type VI secretion system lysozyme-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.961
HA38_20310
Hcp family T6SS protein CtsH1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.958
HA38_04345
Type VI secretion system-associated lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.931
HA38_10725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.912
HA38_04335
Type VI secretion protein ImpG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.907
HA38_20335
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.905
HA38_04315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.886
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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