STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA38_23345Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (85 aa)    
Predicted Functional Partners:
HA38_03495
RpiR family transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.813
HA38_13055
Urea ABC transporter ATP-binding subunit UrtE; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.813
HA38_23350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
HA38_04345
Type VI secretion system-associated lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.783
HA38_06540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.758
HA38_11650
Type IV secretion protein Rhs; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.758
HA38_15495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.758
HA38_16175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.758
HA38_04340
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.728
HA38_21820
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.722
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.