STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
HA38_23360Type VI secretion protein VasK; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (153 aa)    
Predicted Functional Partners:
HA38_23365
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.850
HA38_23370
IS66 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
HA38_11740
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
HA38_11780
Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
HA38_11830
Type IV secretion system protein TraC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
HA38_06275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
HA38_11975
N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.725
HA38_11785
type-F conjugative transfer system pilin assembly protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
HA38_11905
Transcriptional activator RfaH; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.698
HA38_11775
type-F conjugative transfer system pilin assembly protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
Your Current Organism:
Pantoea allii
NCBI taxonomy Id: 574096
Other names: LMG 24248, LMG:24248, P. allii, Pantoea allii Brady et al. 2011, Pantoea sp. BD380, Pantoea sp. BD381, Pantoea sp. BD383, Pantoea sp. BD391, Pantoea sp. BD392, strain BD 390
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