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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW03494.1DNA-binding transcriptional regulator, GntR family. (310 aa)    
Predicted Functional Partners:
SDW03435.1
Glycosyltransferase, MGT family.
 
     0.937
SDW03749.1
Glycosyltransferase, MGT family.
 
     0.800
SDW03811.1
Hypothetical protein.
 
     0.745
SDW03555.1
Spermidine/putrescine transport system substrate-binding protein.
 
     0.605
SDX24246.1
Hypothetical protein.
  
     0.497
SDW03901.1
Acyl-CoA reductase.
 
  
  0.487
SDW61583.1
Hypothetical protein.
  
     0.443
SDW61627.1
WD-40 repeat-containing protein.
  
     0.437
SDX85707.1
D-galactarolactone isomerase.
  
     0.437
SDW03608.1
Spermidine/putrescine transport system permease protein.
 
     0.436
Your Current Organism:
Aidingimonas halophila
NCBI taxonomy Id: 574349
Other names: A. halophila, Aidingimonas halophila Wang et al. 2009, CCTCC AB 207002, Chromohalobacter sp. BH017, DSM 19219, KCTC 12885, Modicisalibacter sp. YIM 90637, YIM 90637
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