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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW87844.1Tripartite ATP-independent transporter solute receptor, DctP family. (344 aa)    
Predicted Functional Partners:
SDW87755.1
TRAP transporter, DctM subunit.
 
  0.990
SDW87806.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.905
SDX93160.1
TRAP transporter, DctM subunit.
 
    0.809
SDX20449.1
TRAP transporter, DctM subunit.
 
    0.801
SDW63419.1
TRAP transporter, DctM subunit.
 
    0.793
SDW98570.1
TRAP transporter, DctM subunit.
 
    0.793
SDX55735.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.792
SDY18415.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.783
SDX99470.1
TRAP transporter, DctM subunit.
 
    0.776
SDY06989.1
TRAP transporter, DctM subunit.
 
    0.770
Your Current Organism:
Aidingimonas halophila
NCBI taxonomy Id: 574349
Other names: A. halophila, Aidingimonas halophila Wang et al. 2009, CCTCC AB 207002, Chromohalobacter sp. BH017, DSM 19219, KCTC 12885, Modicisalibacter sp. YIM 90637, YIM 90637
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