STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW84029.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (329 aa)    
Predicted Functional Partners:
SDW84078.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
  0.993
SDW84120.1
TRAP transporter, DctM subunit.
 
 
  0.990
SDY06572.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.818
SDY06605.1
TRAP transporter, DctM subunit.
 
    0.778
pxpA
UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.543
SDX73426.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.514
SDX55688.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.480
SDY07024.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.480
SDW84159.1
Transcriptional regulator, AraC family.
       0.428
Your Current Organism:
Aidingimonas halophila
NCBI taxonomy Id: 574349
Other names: A. halophila, Aidingimonas halophila Wang et al. 2009, CCTCC AB 207002, Chromohalobacter sp. BH017, DSM 19219, KCTC 12885, Modicisalibacter sp. YIM 90637, YIM 90637
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