Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDW02856.1 | SDX13818.1 | SAMN05443545_1018 | SAMN05443545_10472 | Ribosomal protein S12 methylthiotransferase accessory factor. | ABC-2 type transport system permease protein. | 0.636 |
SDW02856.1 | SDX61012.1 | SAMN05443545_1018 | SAMN05443545_106181 | Ribosomal protein S12 methylthiotransferase accessory factor. | ABC-2 type transport system permease protein. | 0.636 |
SDW02856.1 | SDX80571.1 | SAMN05443545_1018 | SAMN05443545_107202 | Ribosomal protein S12 methylthiotransferase accessory factor. | ABC-2 type transport system permease protein. | 0.636 |
SDW02856.1 | SDX80639.1 | SAMN05443545_1018 | SAMN05443545_107204 | Ribosomal protein S12 methylthiotransferase accessory factor. | Nitroreductase. | 0.707 |
SDW47878.1 | SDX63845.1 | SAMN05443545_1022 | SAMN05443545_106242 | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase/uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | 0.985 |
SDW47878.1 | SDX80639.1 | SAMN05443545_1022 | SAMN05443545_107204 | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | Nitroreductase. | 0.737 |
SDW47878.1 | birA | SAMN05443545_1022 | SAMN05443545_11294 | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.579 |
SDX13818.1 | SDW02856.1 | SAMN05443545_10472 | SAMN05443545_1018 | ABC-2 type transport system permease protein. | Ribosomal protein S12 methylthiotransferase accessory factor. | 0.636 |
SDX13818.1 | SDX80540.1 | SAMN05443545_10472 | SAMN05443545_107201 | ABC-2 type transport system permease protein. | ABC-2 type transport system ATP-binding protein. | 0.490 |
SDX13818.1 | SDX80639.1 | SAMN05443545_10472 | SAMN05443545_107204 | ABC-2 type transport system permease protein. | Nitroreductase. | 0.561 |
SDX61012.1 | SDW02856.1 | SAMN05443545_106181 | SAMN05443545_1018 | ABC-2 type transport system permease protein. | Ribosomal protein S12 methylthiotransferase accessory factor. | 0.636 |
SDX61012.1 | SDX80540.1 | SAMN05443545_106181 | SAMN05443545_107201 | ABC-2 type transport system permease protein. | ABC-2 type transport system ATP-binding protein. | 0.894 |
SDX61012.1 | SDX80571.1 | SAMN05443545_106181 | SAMN05443545_107202 | ABC-2 type transport system permease protein. | ABC-2 type transport system permease protein. | 0.422 |
SDX61012.1 | SDX80639.1 | SAMN05443545_106181 | SAMN05443545_107204 | ABC-2 type transport system permease protein. | Nitroreductase. | 0.580 |
SDX63845.1 | SDW47878.1 | SAMN05443545_106242 | SAMN05443545_1022 | uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase/uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | 0.985 |
SDX63845.1 | SDX80639.1 | SAMN05443545_106242 | SAMN05443545_107204 | uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase/uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | Nitroreductase. | 0.737 |
SDX63845.1 | birA | SAMN05443545_106242 | SAMN05443545_11294 | uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase/uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.579 |
SDX80540.1 | SDX13818.1 | SAMN05443545_107201 | SAMN05443545_10472 | ABC-2 type transport system ATP-binding protein. | ABC-2 type transport system permease protein. | 0.490 |
SDX80540.1 | SDX61012.1 | SAMN05443545_107201 | SAMN05443545_106181 | ABC-2 type transport system ATP-binding protein. | ABC-2 type transport system permease protein. | 0.894 |
SDX80540.1 | SDX80571.1 | SAMN05443545_107201 | SAMN05443545_107202 | ABC-2 type transport system ATP-binding protein. | ABC-2 type transport system permease protein. | 0.976 |
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