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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX75395.1TRAP-type C4-dicarboxylate transport system, small permease component. (173 aa)    
Predicted Functional Partners:
SDX75353.1
TRAP transporter, DctM subunit.
 
  0.963
SDX75315.1
malonyl-CoA decarboxylase.
 
  0.958
SDX75431.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.914
SDX75274.1
malonyl-CoA/methylmalonyl-CoA synthetase.
 
     0.862
SDX75463.1
Transcriptional regulator, GntR family.
 
     0.696
SDW59467.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.693
SDW59428.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.673
SDW87806.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.590
SDW84120.1
TRAP transporter, DctM subunit.
 
  0.465
Your Current Organism:
Aidingimonas halophila
NCBI taxonomy Id: 574349
Other names: A. halophila, Aidingimonas halophila Wang et al. 2009, CCTCC AB 207002, Chromohalobacter sp. BH017, DSM 19219, KCTC 12885, Modicisalibacter sp. YIM 90637, YIM 90637
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