STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX89840.1Hypothetical protein. (115 aa)    
Predicted Functional Partners:
SDX89751.1
Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.773
SDX89784.1
Hypothetical protein.
       0.773
SDX89815.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.773
SDW47932.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
 0.761
SDX78228.1
Succinate dehydrogenase subunit B.
  
 
 0.738
SDX18870.1
Cysteine desulfurase IscS.
  
 
 0.648
SDX19511.1
Cysteine desulfurase.
  
 
 0.648
SDX18834.1
Iron-binding apoprotein IscA; Belongs to the HesB/IscA family.
  
 
 0.626
erpA
Iron-sulfur cluster insertion protein; Required for insertion of 4Fe-4S clusters for at least IspG.
  
 
 0.595
nfuA
Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.595
Your Current Organism:
Aidingimonas halophila
NCBI taxonomy Id: 574349
Other names: A. halophila, Aidingimonas halophila Wang et al. 2009, CCTCC AB 207002, Chromohalobacter sp. BH017, DSM 19219, KCTC 12885, Modicisalibacter sp. YIM 90637, YIM 90637
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