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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY08109.1Transcriptional regulator, LuxR family. (293 aa)    
Predicted Functional Partners:
SDW06270.1
Two-component system, NarL family, sensor histidine kinase BarA.
   
 0.992
SDX59955.1
PAS domain S-box-containing protein.
  
 0.988
SDW31005.1
Signal transduction histidine kinase.
   
 0.961
SDX59997.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 0.877
SDW57665.1
PAS domain S-box-containing protein.
   
 0.859
SDX61947.1
Methyl-accepting chemotaxis protein (MCP) signalling domain-containing protein.
  
 0.767
SDY08147.1
Acetoin utilization deacetylase AcuC.
 
     0.644
SDW30704.1
Signal transduction histidine kinase.
   
 0.639
SDY08182.1
Amino acid/polyamine/organocation transporter, APC superfamily.
 
     0.634
SDW05284.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.619
Your Current Organism:
Aidingimonas halophila
NCBI taxonomy Id: 574349
Other names: A. halophila, Aidingimonas halophila Wang et al. 2009, CCTCC AB 207002, Chromohalobacter sp. BH017, DSM 19219, KCTC 12885, Modicisalibacter sp. YIM 90637, YIM 90637
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