STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_00580acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)    
Predicted Functional Partners:
BAMA_00650
Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.886
BAMA_00560
Acyl-carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.853
BAMA_00575
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.824
BAMA_00570
Acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.
    
  0.796
BAMA_00565
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.782
BAMA_00585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.769
BAMA_00590
Malonyl CoA-acyl carrier protein transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.769
BAMA_00645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.765
BAMA_00595
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.732
BAMA_00600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.702
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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