STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_01255Stage II sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)    
Predicted Functional Partners:
BAMA_14015
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.844
BAMA_11320
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.753
BAMA_12125
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.731
BAMA_19785
Stage II sporulation protein P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.707
BAMA_01225
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.703
BAMA_15670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.694
BAMA_10965
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
BAMA_01455
Stage II sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.654
BAMA_12155
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.640
BAMA_10225
Peptidase S55; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.624
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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