Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAMA_01255Stage II sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)    
Predicted Functional Partners:
BAMA_14015
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.913
BAMA_01225
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.857
BAMA_19785
Stage II sporulation protein P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.829
BAMA_11320
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.805
BAMA_12125
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.760
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.759
BAMA_12155
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.730
BAMA_01455
Stage II sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.727
BAMA_22645
Stage III sporulation protein AH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.698
BAMA_22105
Stage IV sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.682
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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