STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_01580ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
BAMA_01585
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.976
BAMA_01575
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.963
BAMA_01570
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.957
BAMA_03810
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.843
BAMA_03805
Bacteriocin biosynthesis protein SagD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.656
BAMA_16830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.656
BAMA_07650
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.537
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.515
BAMA_00165
NAD(P)H nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.506
BAMA_00370
NAD(P)H nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.506
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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