Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_01770ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)    
Predicted Functional Partners:
BAMA_01775
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
BAMA_01780
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.962
BAMA_13305
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.796
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
  
    0.756
BAMA_13315
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.692
BAMA_10420
Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.687
BAMA_01760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.660
BAMA_18320
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.634
BAMA_09575
Glutathionylspermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.605
BAMA_09990
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.580
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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