Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
BAMA_01780Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)    
Predicted Functional Partners:
BAMA_01770
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.962
BAMA_01775
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.855
BAMA_06205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0346 family.
  
  
 0.789
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
  
    0.756
BAMA_17790
Pectin lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.718
BAMA_16570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.693
BAMA_17910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.693
BAMA_23980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.693
BAMA_01760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.660
BAMA_10415
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.607
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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