STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_02435Membrane protein; Probably functions as a manganese efflux pump. (210 aa)    
Predicted Functional Partners:
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.901
mutM
5-hydroxymethyluracil DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
 
    0.829
BAMA_02480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.810
BAMA_08875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.758
BAMA_22630
Stage III sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.705
BAMA_10225
Peptidase S55; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
BAMA_09010
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
    0.683
BAMA_08345
Translocation-enhancing protein TepA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.683
BAMA_21705
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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