STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_02570CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)    
Predicted Functional Partners:
BAMA_02565
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.623
sspI
Small acid-soluble spore protein SspI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SspI family.
       0.500
BAMA_03800
Bacteriocin maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.451
BAMA_03805
Bacteriocin biosynthesis protein SagD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.451
BAMA_16830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.451
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.